Source: Salinispora tropica CNT250| SMC ID | 219220 | ||||||||||||||
| Type of Sequence | Whole genome sequence | ||||||||||||||
| NCBI Taxonomy ID | 1169196  |
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| Taxonomy |
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| Data Source Description | GenBank | ||||||||||||||
| Genbank Accession ID | GCA_000620345.1 |
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| Project Description | Salinispora tropica CNT250, whole genome sequence - NCBI GenBank | ||||||||||||||
| Assembly Size | 5,170,212 bp | ||||||||||||||
| Scaffolds | 59 | ||||||||||||||
| GC Content | 69.47% | ||||||||||||||
| BGC Count | 25 |
| User | Filename | File Type | Date Added |
|---|---|---|---|
| SMC Bot | GCA_000620345.1.fna
(5.0 MB) |
Nucleotide Fasta | Jun 08, 2023 03:39:27 pm |
| SMC Bot | GCA_000620345.1.filtered.secmet.gff
(6.0 MB) |
GFF | Jun 08, 2023 03:39:27 pm |
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| BGC ID | Compound Name (BGC Class) | Location (contig:start-end) | Attributes |
|---|---|---|---|
| 2620781 | Unknown (Polyketide, RRE-containing, NRPS, NRP, T1PKS, NRPS-like) |
JHVW01000003.1:1-166875 (166874 bp) |
BGC: 0 BGC_Class: NRP, NRPS, NRPS-like, Polyketide, RRE-containing, T1PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2620909 | Unknown (Other, NI-siderophore) |
JHVW01000003.1:227742-255678 (27936 bp) |
BGC: 1 BGC_Class: NRPS-independent-siderophore, Other annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2620927 | Unknown (T2PKS, Polyketide) |
JHVW01000003.1:271092-343607 (72515 bp) |
BGC: 2 BGC_Class: Polyketide, T2PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2620967 | Unknown (RiPP-like) |
JHVW01000011.1:16998-28902 (11904 bp) |
BGC: 3 BGC_Class: RiPP-like annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 2620972 | lomaiviticin A, lomaiviticin C, lomaiviticin D, lomaiviticin E (Saccharide, T2PKS, Polyketide) |
JHVW01000011.1:55879-151250 (95371 bp) |
BGC: 4 BGC_Class: Polyketide, Saccharide, T2PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621021 | Unknown (Other, Guanidinotides) |
JHVW01000012.1:60445-92198 (31753 bp) |
BGC: 5 BGC_Class: guanidinotides, Other annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621033 | Unknown (Aminoglycoside/aminocyclitol) |
JHVW01000022.1:15149-36315 (21166 bp) |
BGC: 6 BGC_Class: amglyccycl annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 2621039 | Unknown (Thiopeptide, LAP, Terpene, RiPP) |
JHVW01000022.1:78985-137621 (58636 bp) |
BGC: 7 BGC_Class: LAP, RiPP, terpene, thiopeptide annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621044 | Unknown (Aryl polyene, NRPS, NRP, Polyketide) |
JHVW01000024.1:50643-132508 (81865 bp) |
BGC: 8 BGC_Class: arylpolyene, NRP, NRPS, Polyketide annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621054 | Unknown (NRPS, NRP) |
JHVW01000027.1:6073-62909 (56836 bp) |
BGC: 9 BGC_Class: NRP, NRPS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621067 | Unknown (T1PKS, Polyketide) |
JHVW01000027.1:84860-123224 (38364 bp) |
BGC: 10 BGC_Class: Polyketide, T1PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621072 | Unknown (Other) |
JHVW01000029.1:65985-77622 (11637 bp) |
BGC: 11 BGC_Class: Other annotation_tool: EMERALDv0.2.4.1 |
| 2621074 | Unknown (Polyketide) |
JHVW01000031.1:34900-43939 (9039 bp) |
BGC: 12 BGC_Class: Polyketide annotation_tool: EMERALDv0.2.4.1 |
| 2621075 | Unknown (Butyrolactone, Other) |
JHVW01000038.1:13395-31465 (18070 bp) |
BGC: 13 BGC_Class: butyrolactone, Other annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621077 | Unknown (T1PKS, Polyketide) |
JHVW01000044.1:1-19769 (19768 bp) |
BGC: 14 BGC_Class: Polyketide, T1PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621079 | Unknown (Polyketide) |
JHVW01000055.1:2-3649 (3647 bp) |
BGC: 15 BGC_Class: Polyketide annotation_tool: EMERALDv0.2.4.1 |
| 2621080 | Unknown (T1PKS, Polyketide) |
JHVW01000056.1:1-3537 (3536 bp) |
BGC: 16 BGC_Class: Polyketide, T1PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621081 | Unknown (Polyketide) |
JHVW01000060.1:1-2188 (2187 bp) |
BGC: 17 BGC_Class: Polyketide annotation_tool: EMERALDv0.2.4.1 |
| 2621082 | likely(salinosporamide A) (Polyketide, NRP, T1PKS, NRPS-like, Trans-AT PKS-like) |
KK211116.1:254556-361997 (107441 bp) |
BGC: 18 BGC_Class: NRP, NRPS-like, Polyketide, T1PKS, transAT-PKS-like annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621088 | Unknown (NAGGN) |
KK211116.1:438546-453295 (14749 bp) |
BGC: 19 BGC_Class: NAGGN annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 2621089 | Unknown (Terpene) |
KK211117.1:94095-115033 (20938 bp) |
BGC: 20 BGC_Class: terpene, Terpene annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621091 | Unknown (T3PKS) |
KK211118.1:59071-100120 (41049 bp) |
BGC: 21 BGC_Class: T3PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 2621092 | Unknown (NRPS, NRP) |
KK211118.1:246303-292425 (46122 bp) |
BGC: 22 BGC_Class: NRP, NRPS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 2621093 | Unknown (RiPP) |
KK211120.1:211031-220567 (9536 bp) |
BGC: 23 BGC_Class: RiPP annotation_tool: EMERALDv0.2.4.1 |
| 2621094 | Unknown (T1PKS, NRP, NRPS-like, Polyketide) |
KK211121.1:52941-108836 (55895 bp) |
BGC: 24 BGC_Class: NRP, NRPS-like, Polyketide, T1PKS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
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