SMC
Version: 1.2.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Polyketide, RRE-containing, NRPS, NRP, T1PKS, NRPS-like
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-219220)
Location: JHVW01000003.1: 1-166875 (166,874 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

antiSMASH
v7.0.0beta1-67b538a9
Date: Jun 08, 2023 03:39:30 pm

Annotation id: 12476310 download GFF for this track

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Emerald
v0.2.4.1
Date: Jun 08, 2023 03:39:35 pm

Annotation id: 12476501 download GFF for this track

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CDDSearch
Date: Jun 08, 2023 03:39:38 pm

Annotation id: 12476820 download GFF for this track

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InterProScan
Date: Jun 08, 2023 03:39:35 pm

Annotation id: 12476504 download GFF for this track

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Comments (1 post)


SMC Bot
Jun 08, 2023 03:39:30 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "1",
    "end": "24276",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1,2,3",
    "contig_edge": "True",
    "product": "RRE-containing,T1PKS",
    "region_number": "1",
    "rules": "minimum(1%2C [Bottromycin_Methyltransferase_RRE%2C Cyanobactin_D_RRE%2C Cytolysin_C_RRE%2C Goadsporin_CD_RRE%2C Heterocycloanthracin_C_RRE%2C Lanthipeptide_LanB_RRE%2C Lasso_Fused_RRE%2C Mycofactocin_RRE%2C NHLP_CD_RRE%2C Other_Sactipeptide_rSAM_RRE%2C Pantocin_Microcin_RRE%2C Plantazolicin_C_RRE%2C PlpY_RRE%2C PqqD_RRE%2C Proteusin_Epimerase_RRE%2C Proteusin_Methyltransferase_RRE%2C Quinohemoprotein_rSAM_RRE%2C Ranthipeptide_rSAM_RRE%2C Stand_Alone_Lasso_RRE%2C Streptide_RRE%2C Subtilosin_rSAM_RRE%2C Thiaglutamate_B_RRE%2C Thiaglutamate_G_RRE%2C Thiaglutamate_I_RRE%2C Thiopeptide_F_RRE%2C Thuricin_rSAM_RRE%2C Thurincin_rSAM_RRE%2C Trifolitoxin_RRE]),cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "3",
    "end": "166875",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JHVW01000003.1_emrld_1",
    "nearest_MiBIG": "BGC0000150",
    "nearest_MiBIG_class": "NRP Polyketide",
    "nearest_MiBIG_diceDistance": "0.373",
    "score": "0.850",
    "partial": "10"
  },
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "25751",
    "end": "104843",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "4,5,6",
    "contig_edge": "False",
    "product": "NRPS-like,T1PKS",
    "region_number": "2",
    "rules": "cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX)),cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "106448",
    "end": "157090",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "7",
    "contig_edge": "False",
    "product": "NRPS,T1PKS",
    "region_number": "3",
    "rules": "cds(Condensation and (AMP-binding or A-OX)),cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  }
]

 
 

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