SMC
Version: 1.3.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): NI-siderophore, Other
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-219220)
Location: JHVW01000003.1: 227742-255678 (27,936 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

antiSMASH
v7.0.0beta1-67b538a9
Date: Jun 08, 2023 03:39:38 pm

Annotation id: 12476878 download GFF for this track

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Emerald
v0.2.4.1
Date: Jun 08, 2023 03:39:38 pm

Annotation id: 12476903 download GFF for this track

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CDDSearch
Date: Jun 08, 2023 03:39:38 pm

Annotation id: 12476954 download GFF for this track

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InterProScan
Date: Jun 08, 2023 03:39:38 pm

Annotation id: 12476905 download GFF for this track

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Comments (1 post)


SMC Bot
Jun 08, 2023 03:39:38 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "227742",
    "end": "253396",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JHVW01000003.1_emrld_2",
    "nearest_MiBIG": "BGC0000940",
    "nearest_MiBIG_class": "Other",
    "nearest_MiBIG_diceDistance": "0.529",
    "score": "0.690",
    "partial": "00"
  },
  {
    "SequenceID/Contig": "JHVW01000003.1",
    "start": "243888",
    "end": "255678",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "8",
    "contig_edge": "False",
    "product": "NRPS-independent-siderophore",
    "region_number": "4",
    "rules": "IucA_IucC",
    "tool": "antismash"
  }
]
 
 

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