SMC
Version: 1.3.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Polyketide, T1PKS
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-219220)
Location: JHVW01000044.1: 1-19769 (19,768 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

GenBank
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477666 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477659 download GFF for this track

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Emerald
v0.2.4.1
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477661 download GFF for this track

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CDDSearch
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477665 download GFF for this track

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InterProScan
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477662 download GFF for this track

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Comments (1 post)


SMC Bot
Jun 08, 2023 03:39:46 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JHVW01000044.1",
    "start": "1",
    "end": "19769",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1",
    "contig_edge": "True",
    "product": "T1PKS",
    "region_number": "1",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "JHVW01000044.1",
    "start": "3",
    "end": "19767",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JHVW01000044.1_emrld_1",
    "nearest_MiBIG": "BGC0000072",
    "nearest_MiBIG_class": "Polyketide",
    "nearest_MiBIG_diceDistance": "0.286",
    "score": "0.970",
    "partial": "11"
  }
]
 
 

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