SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: lomaiviticin A, lomaiviticin C, lomaiviticin D, lomaiviticin E
BGC Class(es): Polyketide, T2PKS, Saccharide
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-219220)
Location: JHVW01000011.1: 55879-151250 (95,371 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

antiSMASH
v7.0.0beta1-67b538a9
Date: Jun 08, 2023 03:39:40 pm

Annotation id: 12477181 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: Jun 08, 2023 03:39:40 pm

Annotation id: 12477269 download GFF for this track

Hide

CDDSearch
Date: Jun 08, 2023 03:39:41 pm

Annotation id: 12477384 download GFF for this track

Hide

InterProScan
Date: Jun 08, 2023 03:39:40 pm

Annotation id: 12477273 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
Jun 08, 2023 03:39:40 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JHVW01000011.1",
    "start": "55879",
    "end": "128433",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "2",
    "contig_edge": "False",
    "product": "T2PKS",
    "region_number": "2",
    "rules": "(t2ks and t2clf)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "JHVW01000011.1",
    "start": "79728",
    "end": "151250",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JHVW01000011.1_emrld_1",
    "nearest_MiBIG": "BGC0000241",
    "nearest_MiBIG_class": "Polyketide Saccharide",
    "nearest_MiBIG_diceDistance": "0.145",
    "score": "0.960",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment