SMC
Version: 1.3.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Ranthipeptide
Source Info
Source: Clostridioides difficile QCD-66c26 - tax_id: 455631 (SMC-1)
Location: NZ_CM000441.1: 3031165-3051308 (20,143 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 02:04:02 pm

Annotation id: 21568 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 02:04:02 pm

Annotation id: 21560 download GFF for this track

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CDDSearch
Date: May 22, 2023 02:04:02 pm

Annotation id: 21567 download GFF for this track

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InterProScan
Date: May 22, 2023 02:04:02 pm

Annotation id: 21562 download GFF for this track

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Comments (1 post)


SMC Bot
May 22, 2023 02:04:02 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_CM000441.1",
    "start": "3031165",
    "end": "3051308",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "6",
    "contig_edge": "False",
    "product": "ranthipeptide",
    "region_number": "4",
    "rules": "(TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1%2C [Bottromycin_Methyltransferase_RRE%2C Cyanobactin_D_RRE%2C Cytolysin_C_RRE%2C Goadsporin_CD_RRE%2C Heterocycloanthracin_C_RRE%2C Lanthipeptide_LanB_RRE%2C Lasso_Fused_RRE%2C Mycofactocin_RRE%2C NHLP_CD_RRE%2C Other_Sactipeptide_rSAM_RRE%2C Pantocin_Microcin_RRE%2C Plantazolicin_C_RRE%2C PlpY_RRE%2C PqqD_RRE%2C Proteusin_Epimerase_RRE%2C Proteusin_Methyltransferase_RRE%2C Quinohemoprotein_rSAM_RRE%2C Ranthipeptide_rSAM_RRE%2C Stand_Alone_Lasso_RRE%2C Streptide_RRE%2C Subtilosin_rSAM_RRE%2C Thiaglutamate_B_RRE%2C Thiaglutamate_G_RRE%2C Thiaglutamate_I_RRE%2C Thiopeptide_F_RRE%2C Thuricin_rSAM_RRE%2C Thurincin_rSAM_RRE%2C Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))",
    "tool": "antismash"
  }
]

 
 

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