Source: Clostridioides difficile QCD-66c26| SMC ID | 1 | ||||||||||||||
| Type of Sequence | Whole genome sequence | ||||||||||||||
| NCBI Taxonomy ID | 455631  |
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| Taxonomy |
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| Data Source Description | RefSeq | ||||||||||||||
| RefSeq Accession ID | GCF_000003215.1 |
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| Project Description | Clostridioides difficile QCD-66c26, whole genome sequence - NCBI Reference Sequence Database | ||||||||||||||
| Assembly Size | 4,127,750 bp | ||||||||||||||
| Scaffolds | 15 | ||||||||||||||
| GC Content | 28.52% | ||||||||||||||
| BGC Count | 9 |
| User | Filename | File Type | Date Added |
|---|---|---|---|
| SMC Bot | GCF_000003215.1.fna
(4.0 MB) |
Nucleotide Fasta | May 22, 2023 09:33:21 am |
| SMC Bot | GCF_000003215.1.filtered.secmet.gff
(6.7 MB) |
GFF | May 22, 2023 09:33:21 am |
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| BGC ID | Compound Name (BGC Class) | Location (contig:start-end) | Attributes |
|---|---|---|---|
| 4492 | Unknown (RRE-containing) |
NZ_CM000441.1:157759-176925 (19166 bp) |
BGC: 0 BGC_Class: RRE-containing annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 4496 | Unknown (RiPP) |
NZ_CM000441.1:459353-465906 (6553 bp) |
BGC: 1 BGC_Class: RiPP annotation_tool: EMERALDv0.2.4.1 |
| 4498 | Unknown (RiPP) |
NZ_CM000441.1:1368327-1372044 (3717 bp) |
BGC: 2 BGC_Class: RiPP annotation_tool: EMERALDv0.2.4.1 |
| 4500 | Unknown (NRPS, NRP) |
NZ_CM000441.1:1405309-1447498 (42189 bp) |
BGC: 3 BGC_Class: NRP, NRPS annotation_tool: antiSMASHv7.0.0beta1-67b538a9, EMERALDv0.2.4.1 |
| 4505 | Unknown (Cyclic lactone autoinducer, Ranthipeptide) |
NZ_CM000441.1:2956241-2977269 (21028 bp) |
BGC: 4 BGC_Class: ranthipeptide, cyclic-lactone-autoinducer annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 4510 | Unknown (Saccharide) |
NZ_CM000441.1:2988337-3002000 (13663 bp) |
BGC: 5 BGC_Class: Saccharide annotation_tool: EMERALDv0.2.4.1 |
| 4512 | Unknown (Ranthipeptide) |
NZ_CM000441.1:3031165-3051308 (20143 bp) |
BGC: 6 BGC_Class: ranthipeptide annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
| 4514 | Unknown (RiPP) |
NZ_CM000441.1:3053291-3062372 (9081 bp) |
BGC: 7 BGC_Class: RiPP annotation_tool: EMERALDv0.2.4.1 |
| 4517 | Unknown (Cyclic lactone autoinducer) |
NZ_CM000441.1:3651777-3672557 (20780 bp) |
BGC: 8 BGC_Class: cyclic-lactone-autoinducer annotation_tool: antiSMASHv7.0.0beta1-67b538a9 |
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