SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): NRPS, NRP
Source Info
Source: Clostridioides difficile QCD-66c26 - tax_id: 455631 (SMC-1)
Location: NZ_CM000441.1: 1405309-1447498 (42,189 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 02:04:02 pm

Annotation id: 21527 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 02:04:02 pm

Annotation id: 21506 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 22, 2023 02:04:02 pm

Annotation id: 21516 download GFF for this track

Hide

CDDSearch
Date: May 22, 2023 02:04:02 pm

Annotation id: 21524 download GFF for this track

Hide

InterProScan
Date: May 22, 2023 02:04:02 pm

Annotation id: 21517 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 22, 2023 02:04:02 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_CM000441.1",
    "start": "1405309",
    "end": "1447498",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "2",
    "contig_edge": "False",
    "product": "NRPS",
    "region_number": "2",
    "rules": "cds(Condensation and (AMP-binding or A-OX))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_CM000441.1",
    "start": "1416643",
    "end": "1432332",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_CM000441.1_emrld_3",
    "nearest_MiBIG": "BGC0000368",
    "nearest_MiBIG_class": "NRP",
    "nearest_MiBIG_diceDistance": "0.680",
    "score": "0.490",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment