NZ_CM000441.1 RefSeq region 1 4094363 + ID=NZ_CM000441.1:1..4094363;Dbxref=taxon:455631;Is_circular=true;Name=ANONYMOUS;country=Canada: Quebec;gb-synonym=Clostridium difficile QCD-66c26;gbkey=Src;genome=chromosome;isolate=QCD-66c26;isolation-source=patient with severe CDAD;mol_type=genomic DNA;nat-host=Homo sapiens;note=binary toxin positive%3B tcdC delta-117 and 18bp deletion;old-name=Clostridium difficile QCD-66c26 NZ_CM000441.1 InterProScan domain 3037116 3038675 2.1E-8 - . interpro_accession=IPR014044;description=CAP domain;date_run=23-03-2023;length=477;analysis=Pfam:PF00188;pfam_description=Cysteine-rich secretory protein family NZ_CM000441.1 InterProScan domain 3036840 3038370 5.8E-16 - . interpro_accession=-;description=-;date_run=23-03-2023;length=477;analysis=Gene3D:G3DSA:3.40.50.12090;gene3d_description=- NZ_CM000441.1 InterProScan domain 3036939 3038459 5.1E-10 - . interpro_accession=-;description=-;date_run=23-03-2023;length=477;analysis=Gene3D:G3DSA:3.40.50.12090;gene3d_description=- NZ_CM000441.1 InterProScan domain 3037103 3038687 1.9E-16 - . interpro_accession=IPR035940;description=CAP superfamily;date_run=23-03-2023;length=477;analysis=Gene3D:G3DSA:3.40.33.10;gene3d_description=CAP NZ_CM000441.1 InterProScan domain 3036821 3038337 1.1E-17 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=477;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3036916 3038431 3.1E-14 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=477;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3037006 3038510 5.5E-10 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=477;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3046457 3047117 8.1E-17 - . interpro_accession=-;description=-;date_run=23-03-2023;length=200;analysis=Pfam:PF14520;pfam_description=Helix-hairpin-helix domain NZ_CM000441.1 InterProScan domain 3046537 3047181 2.5E-11 - . interpro_accession=-;description=-;date_run=23-03-2023;length=200;analysis=Gene3D:G3DSA:1.10.8.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3046450 3047124 2.2E-26 - . interpro_accession=-;description=-;date_run=23-03-2023;length=200;analysis=Gene3D:G3DSA:1.10.150.20;gene3d_description=- NZ_CM000441.1 InterProScan domain 3046388 3047183 2.0E-44 - . interpro_accession=IPR000085;description=Bacterial DNA recombination protein RuvA;date_run=23-03-2023;length=200;analysis=TIGRFAM:TIGR00084;tigrfam_description=ruvA: Holliday junction DNA helicase RuvA NZ_CM000441.1 InterProScan domain 3046387 3047047 1.6E-20 - . interpro_accession=IPR013849;description=DNA helicase%2C Holliday junction RuvA type%2C domain I%2C bacterial;date_run=23-03-2023;length=200;analysis=Pfam:PF01330;pfam_description=RuvA N terminal domain NZ_CM000441.1 InterProScan domain 3046387 3047050 6.4E-21 - . interpro_accession=IPR012340;description=Nucleic acid-binding%2C OB-fold;date_run=23-03-2023;length=200;analysis=Gene3D:G3DSA:2.40.50.140;gene3d_description=- NZ_CM000441.1 InterProScan domain 3046539 3047182 1.3E-10 - . interpro_accession=IPR011114;description=Holliday junction DNA helicase RuvA%2C C-terminal;date_run=23-03-2023;length=200;analysis=Pfam:PF07499;pfam_description=RuvA%2C C-terminal domain NZ_CM000441.1 InterProScan domain 3049234 3050242 1.5E-53 + . interpro_accession=IPR010540;description=Putative ABC-transporter type IV CmpB/TMEM229;date_run=23-03-2023;length=284;analysis=Pfam:PF06541;pfam_description=Putative ABC-transporter type IV NZ_CM000441.1 InterProScan domain 3043439 3044037 3.2E-5 - . interpro_accession=IPR020948;description=Phosphate-starvation-induced PsiE-like;date_run=23-03-2023;length=161;analysis=Pfam:PF06146;pfam_description=Phosphate-starvation-inducible E family NZ_CM000441.1 InterProScan domain 3041800 3042113 2.1E-13 - . interpro_accession=IPR003849;description=Preprotein translocase YajC;date_run=23-03-2023;length=97;analysis=PRINTS:PR01853;prints_description=Bacterial YajC preprotein translocase signature NZ_CM000441.1 InterProScan domain 3041838 3042149 2.1E-13 - . interpro_accession=IPR003849;description=Preprotein translocase YajC;date_run=23-03-2023;length=97;analysis=PRINTS:PR01853;prints_description=Bacterial YajC preprotein translocase signature NZ_CM000441.1 InterProScan domain 3041805 3042173 3.6E-24 - . interpro_accession=IPR003849;description=Preprotein translocase YajC;date_run=23-03-2023;length=97;analysis=TIGRFAM:TIGR00739;tigrfam_description=yajC: preprotein translocase%2C YajC subunit NZ_CM000441.1 InterProScan domain 3041803 3042171 7.2E-29 - . interpro_accession=IPR003849;description=Preprotein translocase YajC;date_run=23-03-2023;length=97;analysis=Pfam:PF02699;pfam_description=Preprotein translocase subunit NZ_CM000441.1 InterProScan domain 3041168 3041353 1.0E-23 - . interpro_accession=IPR023975;description=Six-cysteine peptide SCIFF;date_run=23-03-2023;length=47;analysis=Pfam:PF13165;pfam_description=Six-cysteine peptide SCIFF NZ_CM000441.1 InterProScan domain 3041168 3041353 9.1E-24 - . interpro_accession=IPR023975;description=Six-cysteine peptide SCIFF;date_run=23-03-2023;length=47;analysis=TIGRFAM:TIGR03973;tigrfam_description=six_Cys_in_45: six-cysteine peptide SCIFF NZ_CM000441.1 InterProScan domain 3048699 3049061 1.0E-11 + . interpro_accession=IPR011437;description=Domain of unknown function DUF1540;date_run=23-03-2023;length=107;analysis=Pfam:PF07561;pfam_description=Domain of Unknown Function (DUF1540) NZ_CM000441.1 InterProScan domain 3048638 3048999 7.4E-8 + . interpro_accession=IPR011437;description=Domain of unknown function DUF1540;date_run=23-03-2023;length=107;analysis=Pfam:PF07561;pfam_description=Domain of Unknown Function (DUF1540) NZ_CM000441.1 InterProScan domain 3039072 3041050 8.3E-16 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=631;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3039169 3041128 2.1E-10 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=631;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3038966 3040953 8.9E-13 - . interpro_accession=IPR007253;description=Putative cell wall binding repeat 2;date_run=23-03-2023;length=631;analysis=Pfam:PF04122;pfam_description=ell wall binding domain 2 (CWB2) NZ_CM000441.1 InterProScan domain 3038989 3040987 8.5E-14 - . interpro_accession=-;description=-;date_run=23-03-2023;length=631;analysis=Gene3D:G3DSA:3.40.50.12090;gene3d_description=- NZ_CM000441.1 InterProScan domain 3039095 3041082 1.9E-11 - . interpro_accession=-;description=-;date_run=23-03-2023;length=631;analysis=Gene3D:G3DSA:3.40.50.12090;gene3d_description=- NZ_CM000441.1 InterProScan domain 3046984 3047641 8.1E-52 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=Pfam:PF02075;pfam_description=Crossover junction endodeoxyribonuclease RuvC NZ_CM000441.1 InterProScan domain 3047094 3047638 - - . interpro_accession=IPR020563;description=Crossover junction endodeoxyribonuclease RuvC%2C magnesium-binding site;date_run=23-03-2023;length=169;analysis=ProSitePatterns:PS01321;prositepatterns_description=Crossover junction endodeoxyribonuclease ruvC signature. NZ_CM000441.1 InterProScan domain 3047042 3047567 6.1E-33 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=PRINTS:PR00696;prints_description=Crossover junction endodeoxyribonuclease RUVC signature NZ_CM000441.1 InterProScan domain 3046985 3047507 6.1E-33 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=PRINTS:PR00696;prints_description=Crossover junction endodeoxyribonuclease RUVC signature NZ_CM000441.1 InterProScan domain 3047064 3047589 6.1E-33 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=PRINTS:PR00696;prints_description=Crossover junction endodeoxyribonuclease RUVC signature NZ_CM000441.1 InterProScan domain 3047120 3047641 6.1E-33 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=PRINTS:PR00696;prints_description=Crossover junction endodeoxyribonuclease RUVC signature NZ_CM000441.1 InterProScan domain 3047088 3047616 6.1E-33 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=PRINTS:PR00696;prints_description=Crossover junction endodeoxyribonuclease RUVC signature NZ_CM000441.1 InterProScan domain 3046982 3047652 1.7E-56 - . interpro_accession=IPR036397;description=Ribonuclease H superfamily;date_run=23-03-2023;length=169;analysis=Gene3D:G3DSA:3.30.420.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3046984 3047646 1.4E-45 - . interpro_accession=IPR002176;description=Crossover junction endodeoxyribonuclease RuvC;date_run=23-03-2023;length=169;analysis=TIGRFAM:TIGR00228;tigrfam_description=ruvC: crossover junction endodeoxyribonuclease RuvC NZ_CM000441.1 InterProScan domain 3041379 3041851 3.5E-26 - . interpro_accession=IPR023804;description=Protein of unknown function DUF3792%2C transmembrane;date_run=23-03-2023;length=120;analysis=Pfam:PF12670;pfam_description=Protein of unknown function (DUF3792) NZ_CM000441.1 InterProScan domain 3041379 3041854 3.4E-29 - . interpro_accession=IPR023804;description=Protein of unknown function DUF3792%2C transmembrane;date_run=23-03-2023;length=120;analysis=TIGRFAM:TIGR04086;tigrfam_description=TIGR04086_membr: putative membrane protein%2C TIGR04086 family NZ_CM000441.1 InterProScan domain 3043931 3045282 4.0E-137 - . interpro_accession=IPR042118;description=QueA%2C domain 1;date_run=23-03-2023;length=341;analysis=Gene3D:G3DSA:3.40.1780.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3043920 3045282 1.0E-146 - . interpro_accession=IPR003699;description=S-adenosylmethionine:tRNA ribosyltransferase-isomerase%2C QueA;date_run=23-03-2023;length=341;analysis=Pfam:PF02547;pfam_description=Queuosine biosynthesis protein NZ_CM000441.1 InterProScan domain 3043918 3045282 2.5E-143 - . interpro_accession=IPR003699;description=S-adenosylmethionine:tRNA ribosyltransferase-isomerase%2C QueA;date_run=23-03-2023;length=341;analysis=TIGRFAM:TIGR00113;tigrfam_description=queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase NZ_CM000441.1 InterProScan domain 3043981 3045104 4.0E-137 - . interpro_accession=IPR042119;description=QueA%2C domain 2;date_run=23-03-2023;length=341;analysis=Gene3D:G3DSA:2.40.10.240;gene3d_description=- NZ_CM000441.1 InterProScan domain 3042226 3043713 1.1E-181 - . interpro_accession=IPR004803;description=tRNA-guanine transglycosylase;date_run=23-03-2023;length=373;analysis=TIGRFAM:TIGR00430;tigrfam_description=Q_tRNA_tgt: tRNA-guanine transglycosylase NZ_CM000441.1 InterProScan domain 3042236 3043710 9.4E-167 - . interpro_accession=IPR002616;description=tRNA-guanine(15) transglycosylase-like;date_run=23-03-2023;length=373;analysis=Pfam:PF01702;pfam_description=Queuine tRNA-ribosyltransferase NZ_CM000441.1 InterProScan domain 3042226 3043712 1.2E-173 - . interpro_accession=IPR002616;description=tRNA-guanine(15) transglycosylase-like;date_run=23-03-2023;length=373;analysis=TIGRFAM:TIGR00449;tigrfam_description=tgt_general: tRNA-guanine family transglycosylase NZ_CM000441.1 InterProScan domain 3042221 3043713 3.5E-173 - . interpro_accession=IPR036511;description=Queuine tRNA-ribosyltransferase-like;date_run=23-03-2023;length=373;analysis=Gene3D:G3DSA:3.20.20.105;gene3d_description=- NZ_CM000441.1 InterProScan domain 3031651 3037626 - - . interpro_accession=IPR018247;description=EF-Hand 1%2C calcium-binding site;date_run=23-03-2023;length=1987;analysis=ProSitePatterns:PS00018;prositepatterns_description=EF-hand calcium-binding domain. NZ_CM000441.1 InterProScan domain 3031191 3037291 1.2E-9 - . interpro_accession=-;description=-;date_run=23-03-2023;length=1987;analysis=Gene3D:G3DSA:2.60.120.260;gene3d_description=- NZ_CM000441.1 InterProScan domain 3031725 3037836 9.5E-17 - . interpro_accession=IPR031161;description=Peptidase family M60 domain;date_run=23-03-2023;length=1987;analysis=Pfam:PF13402;pfam_description=Peptidase M60%2C enhancin and enhancin-like NZ_CM000441.1 InterProScan domain 3032024 3038190 2.8E-18 - . interpro_accession=-;description=-;date_run=23-03-2023;length=1987;analysis=Gene3D:G3DSA:2.60.120.260;gene3d_description=- NZ_CM000441.1 InterProScan domain 3031742 3037874 2.1E-30 - . interpro_accession=IPR042279;description=Peptidase M60%2C enhancin-like domain 3;date_run=23-03-2023;length=1987;analysis=Gene3D:G3DSA:1.10.390.30;gene3d_description=- NZ_CM000441.1 InterProScan domain 3045286 3046466 1.5E-48 - . interpro_accession=IPR027417;description=P-loop containing nucleoside triphosphate hydrolase;date_run=23-03-2023;length=339;analysis=Gene3D:G3DSA:3.40.50.300;gene3d_description=- NZ_CM000441.1 InterProScan domain 3045447 3046539 1.4E-32 - . interpro_accession=IPR041445;description=RuvB%2C AAA lid domain;date_run=23-03-2023;length=339;analysis=Pfam:PF17864;pfam_description=RuvB AAA lid domain NZ_CM000441.1 InterProScan domain 3045523 3046618 1.8E-33 - . interpro_accession=IPR036388;description=Winged helix-like DNA-binding domain superfamily;date_run=23-03-2023;length=339;analysis=Gene3D:G3DSA:1.10.10.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3045289 3046611 4.6E-148 - . interpro_accession=IPR004605;description=DNA helicase%2C Holliday junction RuvB-type;date_run=23-03-2023;length=339;analysis=TIGRFAM:TIGR00635;tigrfam_description=ruvB: Holliday junction DNA helicase RuvB NZ_CM000441.1 InterProScan domain 3045522 3046611 1.3E-23 - . interpro_accession=IPR008823;description=RuvB C-terminal winged helix domain;date_run=23-03-2023;length=339;analysis=Pfam:PF05491;pfam_description=RuvB C-terminal winged helix domain NZ_CM000441.1 InterProScan domain 3045286 3046463 7.3E-85 - . interpro_accession=IPR008824;description=RuvB-like P-loop domain;date_run=23-03-2023;length=339;analysis=Pfam:PF05496;pfam_description=Holliday junction DNA helicase RuvB P-loop domain NZ_CM000441.1 InterProScan domain 3045448 3046541 4.0E-32 - . interpro_accession=-;description=-;date_run=23-03-2023;length=339;analysis=Gene3D:G3DSA:1.10.8.60;gene3d_description=-