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Version: 1.3.0
 
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BGC Info
Compound Name: gassericin T
BGC Class(es): RiPP-like, RiPP
Source Info
Source: Lactobacillus gasseri - tax_id: 1596 (SMC-652590)
Location: JAKHQZ010000011.1: 1-11893 (11,892 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

GenBank
Date: Aug 06, 2023 05:09:06 am

Annotation id: 30764456 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764452 download GFF for this track

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Emerald
v0.2.4.1
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764453 download GFF for this track

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CDDSearch
Date: Aug 06, 2023 05:09:06 am

Annotation id: 30764455 download GFF for this track

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InterProScan
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764454 download GFF for this track

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Comments (1 post)


SMC Bot
Aug 06, 2023 05:09:05 am


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JAKHQZ010000011.1",
    "start": "1",
    "end": "9182",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1",
    "contig_edge": "True",
    "product": "RiPP-like",
    "region_number": "1",
    "rules": "(strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or TIGR01193 or (YcaO or TIGR03604))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "JAKHQZ010000011.1",
    "start": "172",
    "end": "11893",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JAKHQZ010000011.1_emrld_1",
    "nearest_MiBIG": "BGC0001388",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.458",
    "score": "0.760",
    "partial": "10"
  }
]

 
 

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