SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): RiPP
Source Info
Source: Lactobacillus gasseri - tax_id: 1596 (SMC-652590)
Location: JAKHQZ010000005.1: 79314-82606 (3,292 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

GenBank
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764451 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764447 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764448 download GFF for this track

Hide

CDDSearch
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764450 download GFF for this track

Hide

InterProScan
Date: Aug 06, 2023 05:09:05 am

Annotation id: 30764449 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
Aug 06, 2023 05:09:05 am
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "JAKHQZ010000005.1",
    "start": "79314",
    "end": "82606",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "JAKHQZ010000005.1_emrld_1",
    "nearest_MiBIG": "BGC0000572",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.538",
    "score": "0.605",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment