SMC
Version: 1.3.0
 
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BGC Info
Compound Name: sporolide A, sporolide B
BGC Class(es): RRE-containing, Aryl polyene, Polyketide, NRPS, NRPS-like, NRP, T1PKS
Source Info
Source: Salinispora tropica CNB-440 - tax_id: 369723 (SMC-4487)
Location: NC_009380.1: 2950657-3266222 (315,565 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 04:12:06 pm

Annotation id: 267492 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 04:12:04 pm

Annotation id: 267372 download GFF for this track

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Emerald
v0.2.4.1
Date: May 22, 2023 04:12:05 pm

Annotation id: 267423 download GFF for this track

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CDDSearch
Date: May 22, 2023 04:12:05 pm

Annotation id: 267489 download GFF for this track

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InterProScan
Date: May 22, 2023 04:12:05 pm

Annotation id: 267426 download GFF for this track

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Comments (1 post)


SMC Bot
May 22, 2023 04:12:04 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2950657",
    "end": "3266222",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NC_009380.1_emrld_9",
    "nearest_MiBIG": "BGC0000150",
    "nearest_MiBIG_class": "NRP Polyketide",
    "nearest_MiBIG_diceDistance": "0.474",
    "score": "0.860",
    "partial": "00"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2960959",
    "end": "3010957",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "14",
    "contig_edge": "False",
    "product": "T1PKS,NRPS",
    "region_number": "12",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)),cds(Condensation and (AMP-binding or A-OX))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "3012687",
    "end": "3092465",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "15,16,17",
    "contig_edge": "False",
    "product": "T1PKS,NRPS-like",
    "region_number": "13",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)),cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "3098059",
    "end": "3255509",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "18,19,20,21,22",
    "contig_edge": "False",
    "product": "T1PKS,RRE-containing,arylpolyene,NRPS",
    "region_number": "14",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)),minimum(1%2C [Bottromycin_Methyltransferase_RRE%2C Cyanobactin_D_RRE%2C Cytolysin_C_RRE%2C Goadsporin_CD_RRE%2C Heterocycloanthracin_C_RRE%2C Lanthipeptide_LanB_RRE%2C Lasso_Fused_RRE%2C Mycofactocin_RRE%2C NHLP_CD_RRE%2C Other_Sactipeptide_rSAM_RRE%2C Pantocin_Microcin_RRE%2C Plantazolicin_C_RRE%2C PlpY_RRE%2C PqqD_RRE%2C Proteusin_Epimerase_RRE%2C Proteusin_Methyltransferase_RRE%2C Quinohemoprotein_rSAM_RRE%2C Ranthipeptide_rSAM_RRE%2C Stand_Alone_Lasso_RRE%2C Streptide_RRE%2C Subtilosin_rSAM_RRE%2C Thiaglutamate_B_RRE%2C Thiaglutamate_G_RRE%2C Thiaglutamate_I_RRE%2C Thiopeptide_F_RRE%2C Thuricin_rSAM_RRE%2C Thurincin_rSAM_RRE%2C Trifolitoxin_RRE]),(APE_KS1 or APE_KS2),cds(Condensation and (AMP-binding or A-OX))",
    "tool": "antismash"
  }
]

 
 

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