SMC
Version: 1.2.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Terpene, RiPP, LAP, Thiopeptide
Source Info
Source: Salinispora tropica CNB-440 - tax_id: 369723 (SMC-4487)
Location: NC_009380.1: 2695031-2748469 (53,438 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 04:12:03 pm

Annotation id: 267338 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 04:12:03 pm

Annotation id: 267318 download GFF for this track

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Emerald
v0.2.4.1
Date: May 22, 2023 04:12:03 pm

Annotation id: 267329 download GFF for this track

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CDDSearch
Date: May 22, 2023 04:12:03 pm

Annotation id: 267335 download GFF for this track

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InterProScan
Date: May 22, 2023 04:12:03 pm

Annotation id: 267330 download GFF for this track

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Comments (1 post)


SMC Bot
May 22, 2023 04:12:03 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2695031",
    "end": "2748469",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "9,10,11",
    "contig_edge": "False",
    "product": "terpene,LAP,thiopeptide",
    "region_number": "9",
    "rules": "(Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5),((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or TIGR03602) and not cyanobactin_synth),((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2712802",
    "end": "2745843",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NC_009380.1_emrld_6",
    "nearest_MiBIG": "BGC0000605",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.590",
    "score": "0.770",
    "partial": "00"
  }
]

 
 

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