SMC
Version: 1.3.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Phenazine, Other, Thiopeptide
Source Info
Source: Pseudomonas aeruginosa - tax_id: 287 (SMC-1836)
Location: NZ_CP047061.1: 2054912-2116451 (61,539 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 03:07:05 pm

Annotation id: 129670 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 03:07:05 pm

Annotation id: 129654 download GFF for this track

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Emerald
v0.2.4.1
Date: May 22, 2023 03:07:05 pm

Annotation id: 129657 download GFF for this track

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CDDSearch
Date: May 22, 2023 03:07:05 pm

Annotation id: 129667 download GFF for this track

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InterProScan
Date: May 22, 2023 03:07:05 pm

Annotation id: 129658 download GFF for this track

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Comments (1 post)


SMC Bot
May 22, 2023 03:07:05 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_CP047061.1",
    "start": "2054912",
    "end": "2085430",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_CP047061.1_emrld_4",
    "nearest_MiBIG": "BGC0000936",
    "nearest_MiBIG_class": "Other",
    "nearest_MiBIG_diceDistance": "0.494",
    "score": "0.820",
    "partial": "00"
  },
  {
    "SequenceID/Contig": "NZ_CP047061.1",
    "start": "2060689",
    "end": "2081701",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "3",
    "contig_edge": "False",
    "product": "phenazine",
    "region_number": "3",
    "rules": "phzB",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_CP047061.1",
    "start": "2083448",
    "end": "2116451",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "4",
    "contig_edge": "False",
    "product": "thiopeptide",
    "region_number": "4",
    "rules": "((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)",
    "tool": "antismash"
  }
]

 
 

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