NZ_CM000441.1 RefSeq region 1 4094363 + ID=NZ_CM000441.1:1..4094363;Dbxref=taxon:455631;Is_circular=true;Name=ANONYMOUS;country=Canada: Quebec;gb-synonym=Clostridium difficile QCD-66c26;gbkey=Src;genome=chromosome;isolate=QCD-66c26;isolation-source=patient with severe CDAD;mol_type=genomic DNA;nat-host=Homo sapiens;note=binary toxin positive%3B tcdC delta-117 and 18bp deletion;old-name=Clostridium difficile QCD-66c26 NZ_CM000441.1 InterProScan domain 3667857 3669942 4.9E-8 - . interpro_accession=IPR008160;description=Collagen triple helix repeat;date_run=23-03-2023;length=675;analysis=Pfam:PF01391;pfam_description=Collagen triple helix repeat (20 copies) NZ_CM000441.1 InterProScan domain 3667914 3670113 1.5E-71 - . interpro_accession=IPR021210;description=Exosporium BclB%2C C-terminal;date_run=23-03-2023;length=675;analysis=TIGRFAM:TIGR03721;tigrfam_description=exospore_TM: BclB C-terminal domain NZ_CM000441.1 InterProScan domain 3657320 3658367 1.2E-11 + . interpro_accession=-;description=-;date_run=23-03-2023;length=277;analysis=Gene3D:G3DSA:1.50.10.20;gene3d_description=- NZ_CM000441.1 InterProScan domain 3653716 3654184 1.3E-18 - . interpro_accession=-;description=-;date_run=23-03-2023;length=138;analysis=Gene3D:G3DSA:2.20.25.90;gene3d_description=- NZ_CM000441.1 InterProScan domain 3653776 3654267 1.2E-28 - . interpro_accession=-;description=-;date_run=23-03-2023;length=138;analysis=Gene3D:G3DSA:3.40.50.740;gene3d_description=- NZ_CM000441.1 InterProScan domain 3653716 3654183 6.0E-15 - . interpro_accession=IPR006963;description=Molybdopterin oxidoreductase%2C 4Fe-4S domain;date_run=23-03-2023;length=138;analysis=Pfam:PF04879;pfam_description=Molybdopterin oxidoreductase Fe4S4 domain NZ_CM000441.1 InterProScan domain 3653775 3654266 2.5E-16 - . interpro_accession=IPR006656;description=Molybdopterin oxidoreductase;date_run=23-03-2023;length=138;analysis=Pfam:PF00384;pfam_description=Molybdopterin oxidoreductase NZ_CM000441.1 InterProScan domain 3656644 3657448 3.1E-54 + . interpro_accession=IPR024264;description=Domain of unknown function DUF3786;date_run=23-03-2023;length=209;analysis=Pfam:PF12654;pfam_description=Domain of unknown function (DUF3786) NZ_CM000441.1 InterProScan domain 3665063 3665766 4.5E-47 - . interpro_accession=IPR009412;description=Protein of unknown function DUF1062;date_run=23-03-2023;length=191;analysis=Pfam:PF06353;pfam_description=Protein of unknown function (DUF1062) NZ_CM000441.1 InterProScan domain 3662423 3662599 9.8E-10 - . interpro_accession=IPR009229;description=Staphylococcal AgrD;date_run=23-03-2023;length=46;analysis=TIGRFAM:TIGR04223;tigrfam_description=quorum_AgrD: cyclic lactone autoinducer peptide NZ_CM000441.1 InterProScan domain 3655653 3656419 2.0E-26 - . interpro_accession=IPR001789;description=Signal transduction response regulator%2C receiver domain;date_run=23-03-2023;length=219;analysis=Pfam:PF00072;pfam_description=Response regulator receiver domain NZ_CM000441.1 InterProScan domain 3655793 3656525 2.1E-18 - . interpro_accession=IPR001867;description=OmpR/PhoB-type DNA-binding domain;date_run=23-03-2023;length=219;analysis=Pfam:PF00486;pfam_description=Transcriptional regulatory protein%2C C terminal NZ_CM000441.1 InterProScan domain 3655765 3656527 1.6E-23 - . interpro_accession=IPR036388;description=Winged helix-like DNA-binding domain superfamily;date_run=23-03-2023;length=219;analysis=Gene3D:G3DSA:1.10.10.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3655729 3656423 5.3E-14 - . interpro_accession=-;description=-;date_run=23-03-2023;length=219;analysis=Gene3D:G3DSA:6.10.250.690;gene3d_description=- NZ_CM000441.1 InterProScan domain 3655650 3656387 1.4E-20 - . interpro_accession=-;description=-;date_run=23-03-2023;length=219;analysis=Gene3D:G3DSA:3.40.50.2300;gene3d_description=- NZ_CM000441.1 InterProScan domain 3665906 3666261 2.4E-6 - . interpro_accession=IPR014875;description=Mor transcription activator;date_run=23-03-2023;length=92;analysis=Pfam:PF08765;pfam_description=Mor transcription activator family NZ_CM000441.1 InterProScan domain 3665940 3666264 2.6E-5 - . interpro_accession=-;description=-;date_run=23-03-2023;length=92;analysis=Gene3D:G3DSA:1.10.10.60;gene3d_description=- NZ_CM000441.1 InterProScan domain 3670928 3671691 4.8E-82 - . interpro_accession=IPR023562;description=Clp protease proteolytic subunit /Translocation-enhancing protein TepA;date_run=23-03-2023;length=194;analysis=Pfam:PF00574;pfam_description=Clp protease NZ_CM000441.1 InterProScan domain 3671027 3671624 - - . interpro_accession=IPR033135;description=ClpP%2C histidine active site;date_run=23-03-2023;length=194;analysis=ProSitePatterns:PS00382;prositepatterns_description=Endopeptidase Clp histidine active site. NZ_CM000441.1 InterProScan domain 3671005 3671606 1.5E-51 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=PRINTS:PR00127;prints_description=Clp protease catalytic subunit P signature NZ_CM000441.1 InterProScan domain 3671083 3671686 1.5E-51 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=PRINTS:PR00127;prints_description=Clp protease catalytic subunit P signature NZ_CM000441.1 InterProScan domain 3670934 3671533 1.5E-51 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=PRINTS:PR00127;prints_description=Clp protease catalytic subunit P signature NZ_CM000441.1 InterProScan domain 3670974 3671578 1.5E-51 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=PRINTS:PR00127;prints_description=Clp protease catalytic subunit P signature NZ_CM000441.1 InterProScan domain 3671026 3671629 1.5E-51 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=PRINTS:PR00127;prints_description=Clp protease catalytic subunit P signature NZ_CM000441.1 InterProScan domain 3670916 3671691 4.0E-96 - . interpro_accession=IPR001907;description=ATP-dependent Clp protease proteolytic subunit;date_run=23-03-2023;length=194;analysis=TIGRFAM:TIGR00493;tigrfam_description=clpP: ATP-dependent Clp endopeptidase%2C proteolytic subunit ClpP NZ_CM000441.1 InterProScan domain 3670916 3671693 1.1E-84 - . interpro_accession=-;description=-;date_run=23-03-2023;length=194;analysis=Gene3D:G3DSA:3.90.226.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3652405 3654191 8.7E-29 - . interpro_accession=IPR006657;description=Molybdopterin dinucleotide-binding domain;date_run=23-03-2023;length=559;analysis=Pfam:PF01568;pfam_description=Molydopterin dinucleotide binding domain NZ_CM000441.1 InterProScan domain 3651986 3653842 6.3E-145 - . interpro_accession=-;description=-;date_run=23-03-2023;length=559;analysis=Gene3D:G3DSA:3.40.228.10;gene3d_description=Dimethylsulfoxide Reductase%2C domain 2 NZ_CM000441.1 InterProScan domain 3651986 3654193 2.0E-209 - . interpro_accession=IPR006478;description=Formate dehydrogenase%2C alpha subunit;date_run=23-03-2023;length=559;analysis=TIGRFAM:TIGR01591;tigrfam_description=Fdh-alpha: formate dehydrogenase%2C alpha subunit NZ_CM000441.1 InterProScan domain 3652445 3654151 - - . interpro_accession=IPR006655;description=Molybdopterin oxidoreductase%2C prokaryotic%2C conserved site;date_run=23-03-2023;length=559;analysis=ProSitePatterns:PS00932;prositepatterns_description=Prokaryotic molybdopterin oxidoreductases signature 3. NZ_CM000441.1 InterProScan domain 3652164 3654038 6.3E-145 - . interpro_accession=-;description=-;date_run=23-03-2023;length=559;analysis=Gene3D:G3DSA:3.40.50.740;gene3d_description=- NZ_CM000441.1 InterProScan domain 3651986 3653995 1.4E-71 - . interpro_accession=IPR006656;description=Molybdopterin oxidoreductase;date_run=23-03-2023;length=559;analysis=Pfam:PF00384;pfam_description=Molybdopterin oxidoreductase NZ_CM000441.1 InterProScan domain 3652402 3654197 7.9E-44 - . interpro_accession=-;description=-;date_run=23-03-2023;length=559;analysis=Gene3D:G3DSA:2.40.40.20;gene3d_description=- NZ_CM000441.1 InterProScan domain 3662898 3664319 6.4E-24 - . interpro_accession=IPR032834;description=Sensor histidine kinase NatK%2C C-terminal domain;date_run=23-03-2023;length=438;analysis=Pfam:PF14501;pfam_description=GHKL domain NZ_CM000441.1 InterProScan domain 3662854 3664320 1.8E-12 - . interpro_accession=IPR036890;description=Histidine kinase/HSP90-like ATPase superfamily;date_run=23-03-2023;length=438;analysis=Gene3D:G3DSA:3.30.565.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 3671526 3672084 1.0E-20 - . interpro_accession=IPR018060;description=DNA binding HTH domain%2C AraC-type;date_run=23-03-2023;length=160;analysis=Pfam:PF12833;pfam_description=Helix-turn-helix domain NZ_CM000441.1 InterProScan domain 3671555 3672079 - - . interpro_accession=IPR018062;description=HTH domain AraC-type%2C conserved site;date_run=23-03-2023;length=160;analysis=ProSitePatterns:PS00041;prositepatterns_description=Bacterial regulatory proteins%2C araC family signature. NZ_CM000441.1 InterProScan domain 3671497 3672037 1.5E-18 - . interpro_accession=-;description=-;date_run=23-03-2023;length=160;analysis=Gene3D:G3DSA:1.10.10.60;gene3d_description=- NZ_CM000441.1 InterProScan domain 3671556 3672103 1.7E-14 - . interpro_accession=-;description=-;date_run=23-03-2023;length=160;analysis=Gene3D:G3DSA:1.10.10.60;gene3d_description=- NZ_CM000441.1 InterProScan domain 3661783 3662540 5.9E-41 - . interpro_accession=IPR006741;description=Accessory gene regulator B;date_run=23-03-2023;length=193;analysis=Pfam:PF04647;pfam_description=Accessory gene regulator B NZ_CM000441.1 InterProScan domain 3669518 3670777 1.2E-23 - . interpro_accession=IPR029044;description=Nucleotide-diphospho-sugar transferases;date_run=23-03-2023;length=358;analysis=Gene3D:G3DSA:3.90.550.10;gene3d_description=Spore Coat Polysaccharide Biosynthesis Protein SpsA%3B Chain A NZ_CM000441.1 InterProScan domain 3669779 3670951 1.5E-18 - . interpro_accession=IPR011990;description=Tetratricopeptide-like helical domain superfamily;date_run=23-03-2023;length=358;analysis=Gene3D:G3DSA:1.25.40.10;gene3d_description=Tetratricopeptide repeat domain NZ_CM000441.1 InterProScan domain 3669522 3670736 8.8E-19 - . interpro_accession=IPR001173;description=Glycosyltransferase 2-like;date_run=23-03-2023;length=358;analysis=Pfam:PF00535;pfam_description=Glycosyl transferase family 2 NZ_CM000441.1 InterProScan domain 3659054 3660068 8.7E-28 - . interpro_accession=IPR003439;description=ABC transporter-like%2C ATP-binding domain;date_run=23-03-2023;length=290;analysis=Pfam:PF00005;pfam_description=ABC transporter NZ_CM000441.1 InterProScan domain 3659036 3660140 5.9E-62 - . interpro_accession=IPR027417;description=P-loop containing nucleoside triphosphate hydrolase;date_run=23-03-2023;length=290;analysis=Gene3D:G3DSA:3.40.50.300;gene3d_description=- NZ_CM000441.1 InterProScan domain 3663898 3664791 5.9E-23 - . interpro_accession=-;description=-;date_run=23-03-2023;length=255;analysis=Gene3D:G3DSA:3.40.50.2300;gene3d_description=- NZ_CM000441.1 InterProScan domain 3664025 3664894 7.3E-23 - . interpro_accession=-;description=-;date_run=23-03-2023;length=255;analysis=Gene3D:G3DSA:2.40.50.1020;gene3d_description=- NZ_CM000441.1 InterProScan domain 3663903 3664780 4.7E-18 - . interpro_accession=IPR001789;description=Signal transduction response regulator%2C receiver domain;date_run=23-03-2023;length=255;analysis=Pfam:PF00072;pfam_description=Response regulator receiver domain NZ_CM000441.1 InterProScan domain 3664039 3664890 3.9E-18 - . interpro_accession=IPR007492;description=LytTR DNA-binding domain;date_run=23-03-2023;length=255;analysis=Pfam:PF04397;pfam_description=LytTr DNA-binding domain NZ_CM000441.1 InterProScan domain 3654399 3655764 1.2E-31 - . interpro_accession=IPR022791;description=Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD;date_run=23-03-2023;length=352;analysis=Pfam:PF03706;pfam_description=Lysylphosphatidylglycerol synthase TM region NZ_CM000441.1 InterProScan domain 3654404 3655778 5.2E-15 - . interpro_accession=IPR022791;description=Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD;date_run=23-03-2023;length=352;analysis=TIGRFAM:TIGR00374;tigrfam_description=TIGR00374: TIGR00374 family protein