NZ_CM000441.1 RefSeq region 1 4094363 + ID=NZ_CM000441.1:1..4094363;Dbxref=taxon:455631;Is_circular=true;Name=ANONYMOUS;country=Canada: Quebec;gb-synonym=Clostridium difficile QCD-66c26;gbkey=Src;genome=chromosome;isolate=QCD-66c26;isolation-source=patient with severe CDAD;mol_type=genomic DNA;nat-host=Homo sapiens;note=binary toxin positive%3B tcdC delta-117 and 18bp deletion;old-name=Clostridium difficile QCD-66c26 NZ_CM000441.1 InterProScan domain 172400 173735 1.4E-131 - . interpro_accession=-;description=-;date_run=23-03-2023;length=406;analysis=Gene3D:G3DSA:3.30.70.360;gene3d_description=- NZ_CM000441.1 InterProScan domain 172232 173813 1.4E-131 - . interpro_accession=-;description=-;date_run=23-03-2023;length=406;analysis=Gene3D:G3DSA:3.40.630.10;gene3d_description=Zn peptidases NZ_CM000441.1 InterProScan domain 172232 173816 7.2E-107 - . interpro_accession=IPR017439;description=Amidohydrolase;date_run=23-03-2023;length=406;analysis=TIGRFAM:TIGR01891;tigrfam_description=amidohydrolases: amidohydrolase NZ_CM000441.1 InterProScan domain 172404 173719 7.9E-14 - . interpro_accession=IPR011650;description=Peptidase M20%2C dimerisation domain;date_run=23-03-2023;length=406;analysis=Pfam:PF07687;pfam_description=Peptidase dimerisation domain NZ_CM000441.1 InterProScan domain 172290 173817 1.4E-32 - . interpro_accession=IPR002933;description=Peptidase M20;date_run=23-03-2023;length=406;analysis=Pfam:PF01546;pfam_description=Peptidase family M20/M25/M40 NZ_CM000441.1 InterProScan domain 159432 160484 4.1E-16 + . interpro_accession=IPR003675;description=Type II CAAX prenyl endopeptidase Rce1-like;date_run=23-03-2023;length=320;analysis=Pfam:PF02517;pfam_description=Type II CAAX prenyl endopeptidase Rce1-like NZ_CM000441.1 InterProScan domain 174113 176310 1.2E-65 - . interpro_accession=IPR027417;description=P-loop containing nucleoside triphosphate hydrolase;date_run=23-03-2023;length=670;analysis=Gene3D:G3DSA:3.40.50.300;gene3d_description=- NZ_CM000441.1 InterProScan domain 174299 176380 4.8E-12 - . interpro_accession=-;description=-;date_run=23-03-2023;length=670;analysis=Gene3D:G3DSA:1.10.8.60;gene3d_description=- NZ_CM000441.1 InterProScan domain 173993 176112 3.1E-8 - . interpro_accession=-;description=-;date_run=23-03-2023;length=670;analysis=Gene3D:G3DSA:3.30.450.20;gene3d_description=PAS domain NZ_CM000441.1 InterProScan domain 174214 176241 - - . interpro_accession=IPR025943;description=Sigma-54 interaction domain%2C ATP-binding site 2;date_run=23-03-2023;length=670;analysis=ProSitePatterns:PS00676;prositepatterns_description=Sigma-54 interaction domain ATP-binding region B signature. NZ_CM000441.1 InterProScan domain 174151 176176 - - . interpro_accession=IPR025662;description=Sigma-54 interaction domain%2C ATP-binding site 1;date_run=23-03-2023;length=670;analysis=ProSitePatterns:PS00675;prositepatterns_description=Sigma-54 interaction domain ATP-binding region A signature. NZ_CM000441.1 InterProScan domain 174369 176472 4.0E-10 - . interpro_accession=IPR036388;description=Winged helix-like DNA-binding domain superfamily;date_run=23-03-2023;length=670;analysis=Gene3D:G3DSA:1.10.10.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 174129 176306 1.0E-69 - . interpro_accession=IPR002078;description=RNA polymerase sigma factor 54 interaction domain;date_run=23-03-2023;length=670;analysis=Pfam:PF00158;pfam_description=Sigma-54 interaction domain NZ_CM000441.1 InterProScan domain 164091 164915 3.0E-15 + . interpro_accession=IPR001789;description=Signal transduction response regulator%2C receiver domain;date_run=23-03-2023;length=237;analysis=Pfam:PF00072;pfam_description=Response regulator receiver domain NZ_CM000441.1 InterProScan domain 164223 165027 1.2E-22 + . interpro_accession=IPR007492;description=LytTR DNA-binding domain;date_run=23-03-2023;length=237;analysis=Pfam:PF04397;pfam_description=LytTr DNA-binding domain NZ_CM000441.1 InterProScan domain 164213 165030 7.3E-26 + . interpro_accession=-;description=-;date_run=23-03-2023;length=237;analysis=Gene3D:G3DSA:2.40.50.1020;gene3d_description=- NZ_CM000441.1 InterProScan domain 164087 164925 5.8E-20 + . interpro_accession=-;description=-;date_run=23-03-2023;length=237;analysis=Gene3D:G3DSA:3.40.50.2300;gene3d_description=- NZ_CM000441.1 InterProScan domain 169408 169733 1.1E-27 + . interpro_accession=IPR023972;description=Conserved hypothetical protein CHP04069%2C acyl carrier-related;date_run=23-03-2023;length=83;analysis=TIGRFAM:TIGR04069;tigrfam_description=ocin_ACP_rel: peptide maturation system acyl carrier-related protein NZ_CM000441.1 InterProScan domain 160528 161603 1.2E-11 - . interpro_accession=IPR003675;description=Type II CAAX prenyl endopeptidase Rce1-like;date_run=23-03-2023;length=326;analysis=Pfam:PF02517;pfam_description=Type II CAAX prenyl endopeptidase Rce1-like NZ_CM000441.1 InterProScan domain 168318 169735 6.7E-118 + . interpro_accession=IPR023823;description=Conserved hypothetical protein CHP04066%2C peptide maturation system;date_run=23-03-2023;length=356;analysis=TIGRFAM:TIGR04066;tigrfam_description=nat_prod_clost: peptide maturation system protein%2C TIGR04066 family NZ_CM000441.1 InterProScan domain 170823 172555 5.2E-53 - . interpro_accession=IPR002293;description=Amino acid/polyamine transporter I;date_run=23-03-2023;length=449;analysis=Pfam:PF13520;pfam_description=Amino acid permease NZ_CM000441.1 InterProScan domain 170818 172611 2.7E-93 - . interpro_accession=-;description=-;date_run=23-03-2023;length=449;analysis=Gene3D:G3DSA:1.20.1740.10;gene3d_description=Amino acid/polyamine transporter I NZ_CM000441.1 InterProScan domain 166955 168753 3.6E-72 + . interpro_accession=IPR013785;description=Aldolase-type TIM barrel;date_run=23-03-2023;length=473;analysis=Gene3D:G3DSA:3.20.20.70;gene3d_description=Aldolase class I NZ_CM000441.1 InterProScan domain 166964 168396 - + . interpro_accession=IPR000385;description=MoaA/NifB/PqqE%2C iron-sulphur binding%2C conserved site;date_run=23-03-2023;length=473;analysis=ProSitePatterns:PS01305;prositepatterns_description=moaA / nifB / pqqE family signature. NZ_CM000441.1 InterProScan domain 166872 168759 2.6E-199 + . interpro_accession=IPR024001;description=Cysteine-rich peptide%2C radical SAM maturase%2C CcpM;date_run=23-03-2023;length=473;analysis=TIGRFAM:TIGR04068;tigrfam_description=rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM NZ_CM000441.1 InterProScan domain 166964 168550 3.1E-13 + . interpro_accession=IPR007197;description=Radical SAM;date_run=23-03-2023;length=473;analysis=Pfam:PF04055;pfam_description=Radical SAM superfamily NZ_CM000441.1 InterProScan domain 166965 168490 1.8E-7 + . interpro_accession=-;description=-;date_run=23-03-2023;length=473;analysis=Pfam:PF13353;pfam_description=4Fe-4S single cluster domain NZ_CM000441.1 InterProScan domain 165438 167361 1.2E-29 + . interpro_accession=IPR003439;description=ABC transporter-like%2C ATP-binding domain;date_run=23-03-2023;length=590;analysis=Pfam:PF00005;pfam_description=ABC transporter NZ_CM000441.1 InterProScan domain 165091 167172 1.0E-25 + . interpro_accession=IPR036640;description=ABC transporter type 1%2C transmembrane domain superfamily;date_run=23-03-2023;length=590;analysis=Gene3D:G3DSA:1.20.1560.10;gene3d_description=ABC transporter type 1%2C transmembrane domain NZ_CM000441.1 InterProScan domain 165418 167434 1.3E-60 + . interpro_accession=IPR027417;description=P-loop containing nucleoside triphosphate hydrolase;date_run=23-03-2023;length=590;analysis=Gene3D:G3DSA:3.40.50.300;gene3d_description=- NZ_CM000441.1 InterProScan domain 158030 159001 - + . interpro_accession=IPR001989;description=Radical-activating enzyme%2C conserved site;date_run=23-03-2023;length=316;analysis=ProSitePatterns:PS01087;prositepatterns_description=Radical activating enzymes signature. NZ_CM000441.1 InterProScan domain 158019 159262 9.2E-115 + . interpro_accession=-;description=-;date_run=23-03-2023;length=316;analysis=TIGRFAM:TIGR02494;tigrfam_description=PFLE_PFLC: glycyl-radical enzyme activating protein NZ_CM000441.1 InterProScan domain 158029 159163 1.2E-12 + . interpro_accession=-;description=-;date_run=23-03-2023;length=316;analysis=Pfam:PF13353;pfam_description=4Fe-4S single cluster domain NZ_CM000441.1 InterProScan domain 158037 159201 2.3E-18 + . interpro_accession=IPR007197;description=Radical SAM;date_run=23-03-2023;length=316;analysis=Pfam:PF04055;pfam_description=Radical SAM superfamily NZ_CM000441.1 InterProScan domain 158014 159267 1.8E-65 + . interpro_accession=IPR013785;description=Aldolase-type TIM barrel;date_run=23-03-2023;length=316;analysis=Gene3D:G3DSA:3.20.20.70;gene3d_description=Aldolase class I NZ_CM000441.1 InterProScan domain 162450 163037 2.7E-38 + . interpro_accession=IPR025870;description=Glyoxalase-like domain;date_run=23-03-2023;length=155;analysis=Pfam:PF12681;pfam_description=Glyoxalase-like domain NZ_CM000441.1 InterProScan domain 162448 163069 8.3E-69 + . interpro_accession=IPR029068;description=Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase;date_run=23-03-2023;length=155;analysis=Gene3D:G3DSA:3.10.180.10;gene3d_description=- NZ_CM000441.1 InterProScan domain 157799 158095 4.8E-20 + . interpro_accession=IPR040923;description=4-hydroxyphenylacetate decarboxylase small gamma subunit%2C C-terminal;date_run=23-03-2023;length=85;analysis=Pfam:PF18524;pfam_description=High potential iron-sulfur protein like NZ_CM000441.1 InterProScan domain 157760 158046 3.6E-19 + . interpro_accession=IPR041125;description=4-hydroxyphenylacetate decarboxylase small gamma subunit%2C N-terminal;date_run=23-03-2023;length=85;analysis=Pfam:PF18671;pfam_description=4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal NZ_CM000441.1 InterProScan domain 157759 158054 5.0E-16 + . interpro_accession=-;description=-;date_run=23-03-2023;length=85;analysis=Gene3D:G3DSA:2.20.70.100;gene3d_description=- NZ_CM000441.1 InterProScan domain 157799 158097 4.2E-19 + . interpro_accession=-;description=-;date_run=23-03-2023;length=85;analysis=Gene3D:G3DSA:2.20.70.100;gene3d_description=-