SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): NAPAA, NRP
Source Info
Source: Mycolicibacterium austroafricanum - tax_id: 39687 (SMC-2491)
Location: NZ_CP070380.1: 5660269-5694225 (33,956 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 03:23:48 pm

Annotation id: 162443 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 03:23:47 pm

Annotation id: 162434 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 22, 2023 03:23:47 pm

Annotation id: 162435 download GFF for this track

Hide

CDDSearch
Date: May 22, 2023 03:23:48 pm

Annotation id: 162440 download GFF for this track

Hide

InterProScan
Date: May 22, 2023 03:23:47 pm

Annotation id: 162436 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 22, 2023 03:23:47 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_CP070380.1",
    "start": "5660269",
    "end": "5694225",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "17",
    "contig_edge": "False",
    "product": "NAPAA",
    "region_number": "15",
    "rules": "(AMP-binding and TIGR02353)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_CP070380.1",
    "start": "5673558",
    "end": "5686322",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_CP070380.1_emrld_25",
    "nearest_MiBIG": "BGC0001570",
    "nearest_MiBIG_class": "NRP",
    "nearest_MiBIG_diceDistance": "0.600",
    "score": "0.660",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment