SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): RiPP, RiPP-like
Source Info
Source: Bacillus pumilus - tax_id: 1408 (SMC-1885)
Location: NZ_CP047089.1: 346137-356427 (10,290 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 03:07:06 pm

Annotation id: 129740 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 03:07:06 pm

Annotation id: 129727 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 22, 2023 03:07:06 pm

Annotation id: 129729 download GFF for this track

Hide

CDDSearch
Date: May 22, 2023 03:07:06 pm

Annotation id: 129737 download GFF for this track

Hide

InterProScan
Date: May 22, 2023 03:07:06 pm

Annotation id: 129732 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 22, 2023 03:07:06 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_CP047089.1",
    "start": "346137",
    "end": "356427",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "3",
    "contig_edge": "False",
    "product": "RiPP-like",
    "region_number": "3",
    "rules": "(strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or TIGR01193 or (YcaO or TIGR03604))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_CP047089.1",
    "start": "347365",
    "end": "355547",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_CP047089.1_emrld_3",
    "nearest_MiBIG": "BGC0000490",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.579",
    "score": "0.810",
    "partial": "00"
  }
]

 
 

   login to post or reply to a comment