SMC
Version: 1.2.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): RiPP
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-108098)
Location: NZ_KK211120.1: 211031-220567 (9,536 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 25, 2023 08:35:41 am

Annotation id: 5327329 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 25, 2023 08:35:40 am

Annotation id: 5327324 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 25, 2023 08:35:40 am

Annotation id: 5327325 download GFF for this track

Hide

CDDSearch
Date: May 25, 2023 08:35:41 am

Annotation id: 5327328 download GFF for this track

Hide

InterProScan
Date: May 25, 2023 08:35:40 am

Annotation id: 5327327 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 25, 2023 08:35:40 am
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_KK211120.1",
    "start": "211031",
    "end": "220567",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_KK211120.1_emrld_1",
    "nearest_MiBIG": "BGC0001639",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.545",
    "score": "0.702",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment