SMC
Version: 1.2.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): RiPP-like
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-108098)
Location: NZ_JHVW01000011.1: 16998-28902 (11,904 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 25, 2023 08:35:34 am

Annotation id: 5326935 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 25, 2023 08:35:33 am

Annotation id: 5326927 download GFF for this track

Hide

CDDSearch
Date: May 25, 2023 08:35:34 am

Annotation id: 5326933 download GFF for this track

Hide

InterProScan
Date: May 25, 2023 08:35:33 am

Annotation id: 5326929 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 25, 2023 08:35:33 am


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_JHVW01000011.1",
    "start": "16998",
    "end": "28902",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1",
    "contig_edge": "False",
    "product": "RiPP-like",
    "region_number": "1",
    "rules": "(strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or TIGR01193 or (YcaO or TIGR03604))",
    "tool": "antismash"
  }
]

 
 

   login to post or reply to a comment